PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC156_p14
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family bHLH
Protein Properties Length: 286aa    MW: 32055 Da    PI: 5.2392
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC156_p14genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH26.89.3e-09153200455
                 HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
         HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                 +h+ +Er RR++iN ++  L+el+P +    +k    a +L + + +++sLq
  RrC156_p14 153 NHSLAERARREKINARMKLLQELVPGC----DKIQGTALVLDEIISHVQSLQ 200
                 79************************9....888999***********9998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474592.22E-15147217IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.91E-8147204No hitNo description
PROSITE profilePS5088814.577149199IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.107.6E-15149213IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.9E-6153200IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.8E-8155205IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 286 aa     Download sequence    Send to blast
MDHLTQGLCR EAVTGLESLS FSDEIQQLVM MPPENTGSFT SLLEMPATQA MELFAGDIAR  60
FSVVAAEDQN GNFSGESAPS SSTGRVKSEP CENDSSQRLV SYPTAENQNQ NQNKRKERGK  120
KVKSSMKKNK SSDEAEKLPY VHVRARRGQA TDNHSLAERA RREKINARMK LLQELVPGCD  180
KIQGTALVLD EIISHVQSLQ RQVEMLSMRL AAVNPIIDFN LDSILASENN SLMDGSFNGE  240
ESYHQLQQWT LDSYLPLEWG REEVHHEANF LMSSATLHPN QMKMEL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1766341e-165AK176634.1 Arabidopsis thaliana mRNA for putative bHLH transcription factor (bHLH048), complete cds, clone: RAFL25-17-F11.
GenBankAY0654111e-165AY065411.1 Arabidopsis thaliana unknown protein (At2g42300) mRNA, complete cds.
GenBankAY0965211e-165AY096521.1 Arabidopsis thaliana unknown protein (At2g42300) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013636341.11e-144PREDICTED: transcription factor bHLH48
SwissprotQ8VZ021e-122BH048_ARATH; Transcription factor bHLH48
TrEMBLA0A0D3BPA31e-144A0A0D3BPA3_BRAOL; Uncharacterized protein
STRINGBra004679.1-P1e-131(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM25762771
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42300.11e-119bHLH family protein